Author

Ellen Schmaljohn

Integrated DNA Technologies (United States)ORCID 0000-0002-0965-9544Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:CRISPR screen· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:perturbation response prediction· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andrea Sánchez PeñaiD· 2 shared Ashley M. JacobiiD· 2 shared Garrett R. RettigiD· 2 shared Gavin KurganiD· 2 shared Kyle J. KinneyiD· 2 shared Morgan L. SturgeoniD· 2 shared Rolf TurkiD· 2 shared Thomas OsborneiD· 2 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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2 shared papersMolecular Biology

Andrea Sánchez PeñaORCID

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2 papers

Recent·Most cited

Molecular BiologyNature CommunicationsPeer-reviewedAug 11, 2026

UNCOVERseq Enables Sensitive and Controlled Gene Editing Off-Target Nomination Across CRISPR-Cas Modalities and Systems

Kyle J. Kinney, Kun Jia, He Zhang…·Gavin Kurgan

UNCOVERseq is a workflow for sensitive off-target nomination in CRISPR-Cas editing, demonstrating superior performance across multiple modalities and systems.

5 citationstop 3%

humanCRISPR screen

BioinformaticsbioRxivPreprintJul 28, 2026

Sensitive Chromosomal Translocation Quantitation from Amplicon Sequencing Using Primer-Anchored Statistical Translocation Analysis (PASTA)

Ellen Schmaljohn, Olalekan H. Usman, Christian M. Brommel…·Gavin Kurgan

PASTA quantifies chromosomal translocations from amplicon sequencing with high accuracy and sensitivity, outperforming existing methods in detecting rare rearrangements.

1 citation

whole-genome sequencingstatistical model