Author

Jennifer Fouquier

Scripps Research InstituteORCID 0000-0002-0975-8235Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Approach:experimental assay· 2 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

Frequent Co-Authors

Ginger TsuengiD· 2 shared Max NanisiD· 2 shared Andrew I Su· 1 shared Andrew I. SuiD· 1 shared Ashley W. ScaddeniD· 1 shared Benjamin M Good· 1 shared Benjamin M. GoodiD· 1 shared Catherine LozuponeiD· 1 shared

Activity by Year

2016-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioinformatics

Ginger TsuengORCID

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Author profile →

3 papers

Recent·Most cited

EXPLANA: A user-friendly workflow for EXPLoratory ANAlysis and feature selection in cross-sectional and longitudinal microbiome studies

Jennifer Fouquier, Maggie A. Stanislawski, John O’Connor, Ashley W. Scadden, Catherine Lozupone

EXPLANA is a workflow for analyzing microbiome data in cross-sectional and longitudinal studies, identifying meaningful features and generating interactive reports.

Bioinformatics · Dec 19, 2025Peer-reviewedBioinformatics

Applying Citizen Science to Gene, Drug, Disease Relationship Extraction from Biomedical Abstracts.

Ginger Tsueng, Max Nanis, Jennifer Fouquier, Michael Mayers, Benjamin M. Good, Andrew I. Su

The paper demonstrates that citizen scientists can perform relationship extraction from biomedical abstracts using Mark2Cure, highlighting the importance of accurate named entity recognition.

Bioinformatics · Aug 30, 2019Peer-reviewedBioinformatics

Citizen Science for Mining the Biomedical Literature

Ginger Tsueng, Max Nanis, Jennifer Fouquier, Benjamin M Good, Andrew I Su

This paper demonstrates that volunteer citizen scientists can perform named entity recognition in biomedical literature with high accuracy using a web-based platform, offering a scalable alternative to paid microtask platforms.

Citizen Science: Theory and Practice · Dec 31, 2016Peer-reviewedBioinformatics