Zixiu Li

Single-base mapping of m6A in lncRNAs reveals a distinct landscape linked to transposable elements and RNA processing

The paper maps m6A modifications in lncRNAs at single-base resolution, revealing distinct patterns linked to transposable elements, RNA structure, and splicing.

Integrative transcriptomic analysis identifies long noncoding RNA dysregulation and circadian disruption in reward and executive circuits of opioid use disorder

Singletrome: A method to analyze and enhance the transcriptome with long noncoding RNAs for single cell analysis

Singletrome enhances scRNA-seq analysis by integrating lncRNA annotations, improving mapping specificity and enabling lncRNA-based cell type clustering and disease prediction.

Frequent lncRNA-derived fusions in pediatric neuroblastoma identified by LncFusion: potential biomarker and therapeutic implications

The paper identifies over 900 lncRNA-derived fusions in pediatric neuroblastoma using LncFusion, revealing their potential as biomarkers and therapeutic targets.

BAMBI: Integrative biostatistical and artificial-intelligence method discover coding and non-coding RNA genes as biomarkers

BAMBI identifies coding and non-coding RNA genes as biomarkers for disease diagnosis and prognosis with high accuracy and biological interpretability.

Flnc: Machine Learning Improves the Identification of Novel Full-length Long Noncoding RNAs from RNA Sequencing Data Without Transcriptional Initiation Profiles

Flnc improves lncRNA identification from RNA-seq data by using machine learning, achieving over 85% accuracy without requiring H3K4me3 profiles.