Christophe Godin

Tree-to-cycle transition scale characterizes trade-off between dissipation and construction cost in adaptive transport networks

The paper introduces a metric to quantify the trade-off between dissipation and construction cost in adaptive transport networks using a single value derived from network architecture.

Branching Varies with Light Limitation Scenarios in relation with Changes in Carbon Source-Sink Dynamics.

This study investigates how continuous and transient light limitation affect bud outgrowth in plants by analyzing carbon source-sink dynamics and sugar availability.

Near-equiprobable binary branching decisions underlie filament patterning in the moss Physcomitrium patens

The paper identifies a probabilistic model for branching in moss filaments, showing subapical cells have near-equal chances of forming or not forming side-branches.

Carbon-phosphorous exchange rate constrains growth of arbuscular mycorrhizal fungal networks

The paper quantifies carbon and phosphorus fluxes in arbuscular mycorrhizal symbiosis using robotic imaging and machine learning, finding that exchange rates constrain fungal growth strategies.

Multi-physics modeling for ion homeostasis in multi-compartment plant cells using an energy function

The paper introduces an energy-based multi-physics model to simulate ion and water transport in plant cells, highlighting the hierarchy of forces involved in stoma opening.

The role of Imp and Syp RBPs in precise neuronal elimination by apoptosis through the regulation of TFs

The paper shows that Imp and Syp RNA-binding proteins regulate neuronal elimination through transcription factor codes in Drosophila, with implications for vertebrate neurogenesis.

Benchmarking of deep learning algorithms for 3D instance segmentation of confocal image datasets

This paper benchmarks deep learning algorithms for 3D instance segmentation of confocal images, showing performance differences and advantages of end-to-end 3D methods.

The post-transcriptional regulation of TFs in immature motoneurons shapes the axon-muscle connectome

The paper identifies post-transcriptional regulation of TFs in immature motoneurons that shapes their axon-muscle connectome through combinatorial TF codes.

A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control

The paper creates a 4-D atlas of early Arabidopsis flower development and uses computational models to identify gene regulatory hypotheses and growth mechanisms.

A microtubule-mediated mechanical feedback controls leaf blade development in three dimensions

The paper shows that microtubule alignment along mechanical stress patterns in internal walls governs the three-dimensional geometry of thin leaf blades.

Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis

The paper investigates how contact-dependent cell communications maintain morphological invariance during ascidian embryogenesis despite genomic divergence.