Author

Vera Beilinson

California Institute of TechnologyORCID 0000-0002-1259-733XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:bacteria (other)· 1 Research Focus:batch correction / integration· 1 Organism:C. elegans· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Kohta IkegamiiD· 2 shared Alexis V. StutzmaniD· 1 shared April S. LiangiD· 1 shared Conrad G. OakesiD· 1 shared Elizabeth B. Angerman· 1 shared Emily R. MiraldiiD· 1 shared Ingrid Jurickova· 1 shared Jasbir DhaliwaliD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersGenomics

Kohta IkegamiORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 27, 2026

Uniform pre-processing of bacterial single-cell RNA-seq

Conrad G. Oakes, Vera Beilinson, Margaret McFall‐Ngai, Lior S. Pachter

The paper adapts kallisto-bustools for bacterial scRNA-seq to enable uniform preprocessing and analysis of microbial single-cell transcriptomics.

DOI 10.64898/2025.12.04.692398

bacteria (other)scRNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 6, 2024

Nutrient starvation activates ECM remodeling gene enhancers associated with inflammatory bowel disease risk in fibroblasts

Stefano Secchia, Vera Beilinson, Xiaoting Chen…·Kohta Ikegami

The paper shows nutrient starvation activates ECM remodeling gene enhancers linked to IBD risk in fibroblasts, suggesting a mechanism for pathological fibroblast activation in IBD.

2 citations

humanDNA methylation

𝕏 PostBluesky

Molecular BiologyEpigenetics & ChromatinPeer-reviewedJan 9, 2020

Transcription-independent TFIIIC-bound sites cluster near heterochromatin boundaries within lamina-associated domains in C. elegans

Alexis V. Stutzman, April S. Liang, Vera Beilinson, Kohta Ikegami

The paper identifies extra-TFIIIC binding sites in C. elegans that cluster near heterochromatin boundaries, suggesting a role in chromatin organization.

20 citations

C. elegansChIP-seq

𝕏 PostBluesky