Author

Katherine Wolstencroft

Leiden UniversityORCID 0000-0002-1279-5133Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Approach:graph neural network· 1 Organism:human· 1

Frequent Co-Authors

Alan R WilliamsiD· 1 shared Alejandra N Gonzalez-BeltraniD· 1 shared Camille LaibeiD· 1 shared Carole GobleiD· 1 shared Chris A. MorrisiD· 1 shared Chris MungalliD· 1 shared Davy CatsiD· 1 shared Donal K. FellowsiD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Alan R WilliamsORCID

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3 papers

Recent·Most cited

BioinformaticsConnection SciencePeer-reviewedFeb 3, 2026

LncRNA-BERT: An RNA Language Model for classifying Coding and Long Non-Coding RNA

Luuk Romeijn, Davy Cats, Katherine Wolstencroft, Hailiang Mei

This paper introduces lncRNA-BERT, an RNA language model that classifies coding and long non-coding RNAs, outperforming existing methods on benchmark datasets.

7 citationstop 1%

humanlong-read sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 17, 2024

Knowledge Graphs and Explainable AI for Drug Repurposing on Rare Diseases

Pablo Perdomo-Quinteiro, Katherine Wolstencroft, Marco Roos, Núria Queralt-Rosiñach

This paper introduces rd-explainer, a graph-based explainable AI method for drug repurposing in rare diseases, which provides interpretable predictions and explanations through semantic graphs.

6 citations

graph neural networkexperimental assay

𝕏 PostBluesky

BioinformaticsPLoS BiologyPeer-reviewedJun 29, 2017

Identifiers for the 21st century:How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data

Julie A. McMurry, Nick Juty, Niklas Blomberg…·Helen Parkinson

The paper outlines ten lessons for designing, provisioning, and reusing persistent identifiers to improve data integration in life sciences.

142 citationstop 1%

benchmarkingdatabase / resource

𝕏 PostBluesky