Douglas Silva Domingues

This study classifies LTR retrotransposons at the superfamily level using Predictive Bi-Clustering Trees, showing comparable performance to existing methods in D. melanogaster and A. thaliana.

This paper presents the first telomere-to-telomere genome of Theobroma grandiflorum, revealing genomic structure, evolutionary relationships, and gene variations that contribute to its unique traits and domestication.

The paper analyzes the genome and population genomics of Coffea arabica to reveal its diversification history and breeding-related genetic changes.

This study evaluates the performance of lncRNA prediction tools on long-read sequencing data and identifies challenges in their application.

This paper compares mathematical models for feature extraction from biological sequences, showing their effectiveness in classifying Long Non-Coding RNA and other sequence types.

TERL classifies transposable elements using CNNs, achieving high accuracy and speed across multiple datasets and classification levels.

mirtronDB is a database that compiles and organizes mirtron data from 18 species, allowing users to search and browse mirtron precursors and mature sequences.