Dawn Anne Thompson

This study quantifies mutation rates and spectra in yeast under rapamycin and hydroxyurea treatments, revealing distinct mutagenic effects and their impact on cell fitness.

The paper constructs a deep transformer model to predict gene expression from cis-regulatory DNA sequences in yeast, revealing evolutionary constraints and evolvability patterns.

The paper identifies intragenic repeat expansions in yeast that influence chronological aging by altering cellular metabolism and environmental interaction.

The paper analyzes the genetic distribution of Saccharomyces eubayanus and finds that Patagonian lineages likely originated the species, which then dispersed globally.

The paper studies transcriptional dynamics in macrophages and Candida albicans during infection, revealing coordinated gene expression changes and heterogeneity in infection outcomes.

GeNets provides a platform to compare genomic networks using machine learning and allows analysis of genetic and RNA sequencing data.