Author

William A. Haese-Hill

University of GlasgowORCID 0000-0002-1393-0966Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 4 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:software / tool· 2 Approach:statistical model· 2

Frequent Co-Authors

Thomas D. OttoiD· 4 shared Kathryn CrouchiD· 3 shared Adam FrankishiD· 1 shared Adrien MorisoniD· 1 shared Alexie PapanicolaouiD· 1 shared Angel LeungiD· 1 shared Anna Heawood· 1 shared Bethany FlintiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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4 shared papersBioinformatics

Thomas D. OttoORCID

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Author profile →

5 papers

Recent·Most cited

GenomicsbioRxivPreprintSep 10, 2026

Apollo 3: Multi-Species Genome Curation

Garrett Stevens, Kyösti Sutinen, Dario Beraldi…·Ian H Holmes

Apollo 3 is a new manual genome annotation tool that integrates with JBrowse 2, enabling multi-genome editing and synteny visualization.

DOI 10.64898/2026.06.08.730970

experimental assaydatabase / resource

𝕏 PostBluesky

BioinformaticsBMC Medical GenomicsPeer-reviewedMay 21, 2025

RNAcare: Integrating Clinical Data with Transcriptomic Evidence using Rheumatoid Arthritis as a Case Study

Mingcan Tang, William A. Haese-Hill, Fraser R. Morton…·Thomas D. Otto

RNAcare integrates clinical and transcriptomic data for bulk RNA-Seq analysis, enabling hypothesis generation about gene expression-clinical symptom relationships in rheumatoid arthritis.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedFeb 8, 2025

paraCell: A novel software tool for the interactive analysis and visualization of standard and dual host-parasite single cell RNA-Seq data

Edward Agboraw, William A. Haese-Hill, Franziska Hentzschel…·Thomas D. Otto

paraCell provides an interactive tool for analyzing and visualizing host-parasite single-cell RNA-Seq data without requiring programming skills.

4 citations

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 19, 2024

Annotation and visualisation of parasite, fungi and arthropod genomes with Companion

William A. Haese-Hill, Kathryn Crouch, Thomas D. Otto

The paper introduces an updated version of the Companion web server for genome annotation, improving efficiency and expanding reference genomes to include fungi and arthropods.

DOI 10.1101/2024.02.19.580948

fungi (other)non-human primate

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMar 1, 2023

peaks2utr: a robust Python tool for the annotation of 3' UTRs

William A. Haese-Hill, Kathryn Crouch, Thomas D. Otto

peaks2utr annotates 3' UTRs using UTR enrichment from single-cell technologies to improve transcriptomic analysis.

23 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky