Author

Dafni Papasokrati

VIB-KU Leuven Center for Brain & Disease ResearchORCID 0000-0002-1524-2155Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Organism:Drosophila· 1 Organism:human· 1

Frequent Co-Authors

Carmen Bravo González‐BlasiD· 2 shared Gert J. HulselmansiD· 2 shared Sara AibariD· 2 shared Stein AertsiD· 2 shared Valerie ChristiaensiD· 2 shared Alicia Estacio‐GómeziD· 1 shared Florian V. De RopiD· 1 shared Gabriel AugheyiD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Carmen Bravo González‐BlasORCID

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2 papers

Recent·Most cited

Decoding gene regulation in the fly brain

Jasper Janssens, Sara Aibar, Ibrahim Ihsan Taskiran, Joy N. Ismail, Alicia Estacio‐Gómez, Gabriel Aughey, Katina I. Spanier, Florian V. De Rop, Carmen Bravo González‐Blas, Marc Dionne, Krista Grimes, Xiao‐Jiang Quan, Dafni Papasokrati, Gert J. Hulselmans, Samira Makhzami, , Stein Aerts

The paper identifies regulatory regions and gene regulatory networks in Drosophila brain cell types using chromatin accessibility and transcriptome data.

Nature · Jan 5, 2022Peer-reviewedGenomics

Cis-topic modelling of single cell epigenomes

Carmen Bravo González‐Blas, Liesbeth Minnoye, Dafni Papasokrati, Sara Aibar, Gert J. Hulselmans, Valerie Christiaens, Kristofer Davie, Jasper Wouters, Stein Aerts

The paper introduces cisTopic, a probabilistic framework for discovering cis-regulatory topics and cell states from single-cell epigenomics data, and validates its findings using RNA-seq co-expression networks and perturbation experiments.

bioRxiv · Jul 16, 2018 · PreprintBioinformatics