Author

Samantha Marie Thomas

University of ChicagoORCID 0000-0002-1561-9303Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:ATAC-seq· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:non-human primate· 1

Frequent Co-Authors

Bryan J. PavloviciD· 2 shared Marsha Myrthil· 2 shared Yoav GiladiD· 2 shared Anil RajiD· 1 shared Anshul Bharat KundajeiD· 1 shared Chiaowen Joyce HsiaoiD· 1 shared Claudia I. Chavarria· 1 shared Courtney K. BurrowsiD· 1 shared

Activity by Year

2018-2018 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Bryan J. PavlovicORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

A Comparative Study Of Endoderm Differentiation In Humans And Chimpanzees

Lauren E. Blake, Samantha Marie Thomas, John Blischak, Chiaowen Joyce Hsiao, Claudia I. Chavarria, Marsha Myrthil, Yoav Gilad, Bryan J. Pavlovic

This study compares endoderm differentiation in humans and chimpanzees using iPSCs, finding high conservation of gene regulatory trajectories despite species-specific expression differences.

Genome biology · Oct 15, 2018Peer-reviewedGenomics

Impact of regulatory variation across human iPSCs and differentiated cells

Nicholas E. Banovich, Yang Li, Anil Raj, Michelle C. Ward, Peyton Greenside, Diego Calderon, Po‐Yuan Tung, Jonathan E. Burnett, Marsha Myrthil, Samantha Marie Thomas, Courtney K. Burrows, Irene Gallego Romero, Bryan J. Pavlovic, Anshul Bharat Kundaje, Jonathan K. Pritchard, Yoav Gilad

The paper examines regulatory variation in iPSCs and differentiated cells, finding lower individual variation in iPSCs and identifying shared chromatin regions for some cell type-specific QTLs.

Genome Research · Jan 1, 2018Peer-reviewedGenomics