Author

Dmitriy Sonkin

National Cancer InstituteORCID 0000-0002-1649-0652Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Organism:human· 2 Approach:statistical model· 2 Assay:whole-exome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Deborah RitteriD· 3 shared Malachi GriffithiD· 3 shared Obi L. GriffithiD· 3 shared Subha MadhavaniD· 3 shared Alex Handler WagneriD· 2 shared Gordana RacaiD· 2 shared Kilannin KrysiakiD· 2 shared Shruti RaoiD· 2 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersBioinformatics

Deborah RitterORCID

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3 papers

Recent·Most cited

A harmonized meta-knowledgebase of clinical interpretations of cancer genomic variants

Alex Handler Wagner, Brian Walsh, Georgia Mayfield, David Tamborero, Dmitriy Sonkin, Kilannin Krysiak, Jordi Deu-Pons, Ryan P. Duren, Jianjiong Gao, Julie A. McMurry, Sara E. Patterson, Catherine Del Vecchio Fitz, Beth A. Pitel, Osman Uğur Sezerman, Kyle Ellrott, , Adam A. Margolin

The paper harmonizes clinical interpretations of cancer genomic variants across six knowledgebases, improving overlap and matching with patient cohorts.

Nature Genetics · Apr 1, 2020Peer-reviewedBioinformatics

The CIViC knowledge model and standard operating procedures for curation and clinical interpretation of variants in cancer

Arpad M. Danos, Kilannin Krysiak, Erica Kay Barnell, Adam C. Coffman, Joshua F. McMichael, Susanna Kiwala, Nicholas C. Spies, Lana M. Sheta, Shahil P. Pema, Lynzey Kujan, Kaitlin A. Clark, Amber Z. Wollam, Shruti Rao, Deborah Ritter, Dmitriy Sonkin, , Obi L. Griffith

The paper describes the CIViC knowledge model and curation procedures for systematically organizing and interpreting cancer-related genetic variants.

Genome Medicine · Nov 28, 2019Peer-reviewedBioinformatics

Clingen Cancer Somatic Working Group: standardizing and democratizing access to cancer molecular diagnostic data to drive translational research

Subha Madhavan, Deborah Ritter, Christine Micheel, Shruti Rao, Angshumoy Roy, Dmitriy Sonkin, Matthew McCoy, Malachi Griffith, Obi L. Griffith, Peter B. McGarvey, Shashikant Kulkarni, On Behalf Of The Clingen Somatic Working Group

The paper describes the development of standards for cancer variant interpretation and sharing through the ClinGen Cancer Somatic Working Group.

Pacific Symposium on Biocomputing (PSB) · Nov 17, 2017Peer-reviewedBioinformatics