Shahil P. Pema

Comprehensive single-cell atlas of the mouse retina

The paper generates a large-scale single-cell RNA-seq dataset of the mouse retina and integrates it with public data to create a comprehensive cell atlas.

Evolution of the open-access CIViC knowledgebase is driven by the needsof the cancer variant interpretation community

The paper describes the evolution of the CIViC knowledgebase to meet the needs of the cancer variant interpretation community by expanding its functionality and data types.

The CIViC knowledge model and standard operating procedures for curation and clinical interpretation of variants in cancer

The paper describes the CIViC knowledge model and curation procedures for systematically organizing and interpreting cancer-related genetic variants.

Standard operating procedure for somatic variant refinement of tumor sequencing data

This paper establishes a standard operating procedure for manual refinement of somatic variants in tumor sequencing data to improve consistency and reproducibility.