Yuxuan Lan

EISCA and EISTA are pipelines for single-cell and spatial transcriptomics analysis that provide standardized, modular workflows for data processing and downstream analysis.

The paper describes an automated robotic pipeline for high-throughput plasmid DNA purification and uses it to build a lentiviral DNA plasmid library for lineage tracing.

The paper shows that nitrogen responses in plant roots are cell-type specific and evolve across species, with NLP7 proteins modulating these responses in Arabidopsis and tomato.

This study compares long-read single-cell sequencing platforms, identifying common limitations and demonstrating their utility for isoform-resolved analyses.

The paper evaluates nanopore sequencing and assembly improvements for Arabidopsis genome assembly and methylation analysis using a single MinION flow cell.

This study shows that a low protein diet reduces liver damage from Salmonella infection by altering macrophage metabolism and autophagy.

The paper uses single-nucleus RNA sequencing to identify five distinct classes of anterolateral system neurons in the adult mouse spinal cord and their laminar distribution.

This paper demonstrates how adaptive sampling in nanopore sequencing can enrich low-abundance species in metagenomic samples, with efficiency improving with longer read lengths and a mathematical model to predict outcomes.