Vladimir A. Shitov

The paper presents the Human Gut Cell Atlas v1.0, a unified reference of gut cell diversity, revealing how tissue structure influences cellular composition and enabling disease and organoid analysis.

The paper introduces scAtlasTb, a framework for building and optimizing single-cell reference atlases, demonstrating its application on three Human Cell Atlas projects.

The paper presents a longitudinal multimodal benchmarking dataset and competition to evaluate modality prediction methods for gene regulatory inference, showing top models outperform existing approaches.

ArchMap provides a no-code tool for reference-based analysis of single-cell datasets, enabling automated mapping, annotation, and collaboration across reference atlases.