Agne Antanaviciute

Beyond Better Models: Barriers and a Path Forward in Generalisable TCR Antigen Specificity Prediction

This paper identifies barriers to generalisable TCR:pMHC prediction and proposes solutions through data analysis, evaluation setup, and metric alignment.

The Human Gut Cell Atlas v1.0: A Unified, Community-Built Reference of Cellular Diversity Across the Gut

The paper presents the Human Gut Cell Atlas v1.0, a unified reference of gut cell diversity, revealing how tissue structure influences cellular composition and enabling disease and organoid analysis.

Postnatal Reprogramming Shapes Human Intestinal Epithelial Immune Competency

The paper defines the developmental circuits and mechanisms underlying postnatal intestinal epithelial immune competency using single-cell multi-omics and spatial transcriptomics.

A robust deep learning platform to predict CD8+ T-cell epitopes

This paper introduces TRAP, a deep learning platform for predicting CD8+ T-cell epitopes, which outperforms existing methods in cancer and pathogenic settings.