Author

Bojing Blair Jia

University of California San DiegoORCID 0000-0002-2090-2912Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:mouse· 2 Assay:DNA methylation· 1 Assay:spatial transcriptomics· 1 Research Focus:trajectory inference· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Adam JussilaiD· 2 shared Bing ReniD· 2 shared Alistair Nicol BoettigeriD· 1 shared Antonina HafneriD· 1 shared Caterina Strambio‐De‐CastilliaiD· 1 shared Chenxu ZhuiD· 1 shared Colin KerniD· 1 shared Duan Dennis Wang· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Adam JussilaORCID

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2 papers

Recent·Most cited

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

Lindsay Lee, Hongyu Yu, Bojing Blair Jia, Adam Jussila, Chenxu Zhu, Jiawen Carmen Chen, Liangqi Xie, Antonina Hafner, Shreya V. Mishra, Duan Dennis Wang, Caterina Strambio‐De‐Castillia, Alistair Nicol Boettiger, Bing Ren, Yun Li, Ming Hu

SnapFISH identifies chromatin loops from multiplexed DNA FISH data with high sensitivity and accuracy in mouse embryonic stem cells.

Nature Communications · Aug 12, 2023Peer-reviewedBioinformatics

A spatial genome aligner for multiplexed DNA-FISH

Bojing Blair Jia, Adam Jussila, Colin Kern, Quan Zhu, Bing Ren

This paper introduces a spatial genome aligner that reconstructs chromosome architectures from DNA-FISH data and identifies chromosome ploidies, revealing new insights into chromatin organization.

bioRxiv · Mar 25, 2022 · PreprintGenomics