Author

Adam Jussila

University of California San DiegoORCID 0000-0002-8380-6688Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2 Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Organism:mouse· 4 Assay:ChIP-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:CRISPR screen· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Bing ReniD· 4 shared Bojing Blair JiaiD· 2 shared Colin KerniD· 2 shared Hui HuangiD· 2 shared Ming HuiD· 2 shared Quan ZhuiD· 2 shared Alistair Nicol BoettigeriD· 1 shared Andrea M. ChiarielloiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersGenomics

Bing RenORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

GenomicsbioRxivPreprintFeb 21, 2025

Context-Dependent and Gene-Specific Role of Chromatin Architecture Mediated by Histone Modifiers and Loop-extrusion Machinery

Melodi Tastemel, Adam Jussila, Bharath Saravanan…·Bing Ren

The paper investigates how chromatin architecture, mediated by histone modifiers and loop-extrusion machinery, influences gene regulation in mouse embryonic stem cells under different conditions.

DOI 10.1101/2025.02.21.639596

mouseChIP-seq

BioinformaticsNature CommunicationsPeer-reviewedAug 12, 2023

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

Lindsay Lee, Hongyu Yu, Bojing Blair Jia…·Ming Hu

SnapFISH identifies chromatin loops from multiplexed DNA FISH data with high sensitivity and accuracy in mouse embryonic stem cells.

8 citations

mouseDNA methylation

GenomicsbioRxivPreprintMar 25, 2022

A spatial genome aligner for multiplexed DNA-FISH

Bojing Blair Jia, Adam Jussila, Colin Kern…·Bing Ren

This paper introduces a spatial genome aligner that reconstructs chromosome architectures from DNA-FISH data and identifies chromosome ploidies, revealing new insights into chromatin organization.

2 citations

mousespatial transcriptomics

Molecular BiologybioRxivPreprintJul 7, 2020

CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains

Hui Huang, Quan Zhu, Adam Jussila…·Bing Ren

This study investigates how CTCF binding sites mediate transcriptional insulation in mouse embryonic stem cells, showing that insulation depends on CTCF site number, sequence context, and TAD boundary location.

13 citations

mouseChIP-seq