Johannes Alneberg

Whole genome sequencing with AVITI and NovaSeq X Plus reveals comparable performance with contextual biases

The paper compares variant calling performance between Illumina NovaSeq X Plus and Element AVITI sequencing platforms using whole genome sequencing of human tumor cell lines, finding comparable results with minor differences in specific genomic contexts.

Revealing ecologically coherent population structure of uncultivated bacterioplankton with POGENOM

POGENOM quantifies population genomic indices from metagenome data, revealing environmental correlates of genomic variation in bacterioplankton across spatial and temporal scales.

nf-core: Community curated bioinformatics pipelines

A peer-reviewed, community-run framework for Nextflow analysis pipelines, plus helper tooling, meant to make workflows portable and reproducible across institutions rather than tied to one cluster.

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

The paper compares single-amplified genomes and metagenome-assembled genomes from uncultivated prokaryotes, finding high similarity between them and highlighting their complementary strengths.

Metagenome-assembled genomes uncover a global brackish microbiome

The paper reconstructs bacterioplankton genomes from the Baltic Sea metagenome, revealing a global brackish microbiome distinct from freshwater and marine microbes.