Author
Karolinska InstitutetORCID 0000-0003-2827-9261Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Björn E. Langer, Andreia Neves do Amaral, Marie-Odile Baudement…·The Nf-Core Community
This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.
Jérôme Salignon, Lluís Millán-Ariño, Maxime Ulysse Garcia, Christian G. Riedel
Friederike Hanssen, Maxime Ulysse Garcia, Lasse Folkersen…·Sven Nahnsen
The paper presents an optimized variant calling pipeline that reduces storage and runtime costs for DNA sequencing analysis.
James A. Fellows Yates, Thiseas C. Lamnidis, Maxime Borry…·Alexander Peltzer
The paper introduces nf-core/eager, a Nextflow pipeline for ancient genome reconstruction, focusing on accessibility, reproducibility, and adaptability to modern practices.
Maxime Ulysse Garcia, Szilveszter Juhos, Malin Larsson…·Björn Nystedt
Sarek provides a portable and reproducible workflow for analyzing germline and somatic variants from whole-genome sequencing data.
Philip Ewels, Alexander Peltzer, Sven Fillinger…·Sven Nahnsen
A peer-reviewed, community-run framework for Nextflow analysis pipelines, plus helper tooling, meant to make workflows portable and reproducible across institutions rather than tied to one cluster.