Author

Nicolas Scalzitti

Laboratoire des Sciences de l'Ingénieur, de l'Informatique et de l'ImagerieORCID 0000-0002-2477-3054Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Julie ThompsoniD· 2 shared Olivier PochiD· 2 shared Arthur Vogt· 1 shared Assaf A. GiladiD· 1 shared Claudine MayeriD· 1 shared Daniel HolmesiD· 1 shared Iliya MiralavyiD· 1 shared Kirsley ChenneniD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioinformatics

Julie ThompsonORCID

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3 papers

Recent·Most cited

BiophysicsNMR in BiomedicinePeer-reviewedSep 11, 2026

Machine learning-based development of Gadolinium binding peptides

Nir A. Dayan, Makayla Long, Nicolas Scalzitti…·Assaf A. Gilad

This paper uses machine learning to design Gd-binding peptides with improved relaxivity and specificity for MRI contrast agents.

DOI 10.1002/nbm.70381

protein sequencemachine learning (classical)

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 1, 2025

Do 5' regions of human protein-coding genes contain the blueprints for alternative splicing?

Thomas Weber, Luc Moulinier, Nicolas Scalzitti…·Olivier Poch

The paper investigates whether 5' regions of human protein-coding genes contain blueprints for alternative splicing by comparing genes with multiple and single transcript isoforms.

DOI 10.1101/2025.11.01.686005

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 15, 2022

CeGAL: revisiting a widespread fungal-specific TF family using an in silico error-aware approach to identify missing zinc cluster domains

Claudine Mayer, Arthur Vogt, Tuba Uslu…·Julie Thompson

The paper identifies that most MHD-only fungal TFs lack a DNA binding domain due to annotation errors, redefining the CeGAL family as a new TF family with Zn2C6-MHD domains.

DOI 10.1101/2022.06.15.496365

fungi (other)protein sequence

𝕏 PostBluesky