Author

Allen Y. Chung

Columbia University Irving Medical CenterORCID 0000-0002-2494-9179Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Molecular Biology· 2 Genomics· 1 Pathology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 4 Research Focus:differential expression· 4 Organism:mouse· 4 Assay:scRNA-seq· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Robert C. BaueriD· 4 shared Alexander C. BashoreiD· 3 shared Hanying YaniD· 3 shared Chenyi XueiD· 2 shared Chinyere O. Ibikunle· 2 shared Hyun-Kyung ChangiD· 2 shared Lauren E. FriesiD· 2 shared Mingyao LiiD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersMolecular Biology

Robert C. BauerORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

PathologyJournal of Clinical InvestigationPeer-reviewedJan 29, 2026

ADAMTS7 promotes smooth muscle foam cell expansion in atherosclerosis

Allen Y. Chung, Lauren E. Fries, Hyun-Kyung Chang…·Robert C. Bauer

This study identifies ADAMTS7's role in promoting atherosclerosis by enhancing smooth muscle cell foam cell formation via an AP-1/PU.1/CD36 pathway.

14 citationstop 1%

𝕏 PostBluesky

GenomicsAtherosclerosisPeer-reviewedOct 3, 2025

Single-Cell RNA-Seq Reveals Adventitial Fibroblast Alterations during Mouse Atherosclerosis

Lauren E. Fries, Allen Y. Chung, Hyun-Kyung Chang…·Robert C. Bauer

The paper uses scRNA-seq to study adventitial fibroblast changes in mouse atherosclerosis and identifies SERPINH1 as a key regulator affecting fibroblast function.

3 citations

𝕏 PostBluesky

Molecular BiologybioRxivPreprintMay 20, 2025

Comprehensive Multimodal Profiling of Atherosclerosis Reveals Bhlhe40 as a Potential Regulator of Vascular Smooth Muscle Cell Phenotypic Modulation

Chinyere O. Ibikunle, Chenyi Xue, Eunyoung Kim…·Muredach P. Reilly

DOI 10.1101/2025.05.20.655228

𝕏 PostBluesky

Molecular BiologyCirculationPeer-reviewedApr 8, 2024

Single-cell multimodal profiling of atherosclerosis identifies CD200 as a lineage marker of vascular smooth muscle cells and their derived cells

Alexander C. Bashore, Allen Y. Chung, Chinyere O. Ibikunle…·Muredach P. Reilly

The paper identifies CD200 as a specific marker for vascular smooth muscle cells and their derived cells in atherosclerosis using CITE-seq and validates it across multiple techniques.

12 citations

𝕏 PostBluesky