Author

Katarzyna Siudeja

Centre National de la Recherche ScientifiqueORCID 0000-0002-2522-7776Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Organism:Drosophila· 3 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Allison J. BardiniD· 3 shared Benjamin BoumardiD· 2 shared Marius van den BeekiD· 2 shared Nick RiddifordiD· 2 shared Annabelle WurmseriD· 1 shared Darshika SinghiD· 1 shared Fabienne ChalvetiD· 1 shared Louis Barolle· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersGenomics

Allison J. BardinORCID

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3 papers

Recent·Most cited

An endogenous retroviral element co-opts an upstream regulatory sequence to achieve somatic expression and mobility

Natalia Rubanova, Darshika Singh, Louis Barolle, Fabienne Chalvet, Sophie Netter, Mickaël Poidevin, Nicolas Servant, Allison J. Bardin, Katarzyna Siudeja

The paper identifies an endogenous retroviral element that uses an upstream enhancer for somatic expression and mobility in Drosophila intestine.

Nucleic Acids Research · May 23, 2025Peer-reviewedGenomics

Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells

Nick Riddiford, Katarzyna Siudeja, Marius van den Beek, Benjamin Boumard, Allison J. Bardin

This study analyzes spontaneous somatic mutations in Drosophila intestinal stem cells using whole-genome sequencing to understand early cancer mutation dynamics and genomic signatures.

Genome Research · Aug 1, 2021Peer-reviewedGenomics

Somatic transposition in the Drosophila intestine occurs in active chromatin and is associated with tumor suppressor gene inactivation

Katarzyna Siudeja, Marius van den Beek, Nick Riddiford, Benjamin Boumard, Annabelle Wurmser, Marine Stefanutti, Sonia Lameiras, Allison J. Bardin

The paper identifies somatic transposition in Drosophila intestine, showing it occurs in active chromatin and is linked to tumor suppressor gene inactivation.

The EMBO Journal · Feb 26, 2021Peer-reviewedDevelopmental Biology