Thomas Duigou

This paper introduces ChemProFlow, a framework that maps molecular transportability to microorganisms by predicting transport mechanisms and identifying relevant organisms.

Galaxy-SynBioCAD provides an automated pipeline for synthetic biology design and engineering, achieving an 83% success rate in retrieving validated pathways.

PeroxiHUB is a cell-free biosensing platform that detects metabolites by converting them into H2O2 using enzymatic transducers, enabling modular and scalable detection.

This paper introduces a reinforcement learning approach for bio-retrosynthesis to design metabolic pathways, validated on curated datasets and with media supplement suggestions.

RetroPath2.0 is an open-source retrosynthesis workflow that streamlines pathway design for metabolic engineering by using generalized reaction rules and KNIME.

The paper demonstrates the use of RetroPath2.0 for molecular structure enumeration and virtual screening in chemical space, including applications for glass transition temperature prediction and antibacterial activity optimization.