Author

Shafaqat Ali

Düsseldorf University HospitalORCID 0000-0002-2707-9391Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Stefanie ScheuiD· 2 shared Felix Steinbeck· 1 shared Judith AlferinkiD· 1 shared Karl KöhreriD· 1 shared Mahamudul Hasan BhuyaniD· 1 shared Norbert GoebelsiD· 1 shared Patrick PetzschiD· 1 shared Ritu Mann‐NütteliD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersImmunology

Stefanie ScheuORCID

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2 papers

Recent·Most cited

An immunophenotype-coupled transcriptomic atlas of mouse hematopoietic progenitors

Mahamudul Hasan Bhuyan, Sumanta Barman, Shafaqat Ali, Felix Steinbeck, Tobias Lautwein, Norbert Goebels, Stefanie Scheu

This paper constructs a CITE-seq-based atlas of mouse hematopoietic progenitors, identifying 28 progenitor stages across eight lineages and novel surface markers.

bioRxiv · Sep 12, 2026 · PreprintImmunology

The transcription factor reservoir and chromatin landscape in activated plasmacytoid dendritic cells

Ritu Mann‐Nüttel, Shafaqat Ali, Patrick Petzsch, Karl Köhrer, Judith Alferink, Stefanie Scheu

This study characterizes the transcription factor reservoir and chromatin landscape in naive and TLR9-activated plasmacytoid dendritic cells across multiple timepoints.

BMC Genomic Data · Sep 20, 2021Peer-reviewedMolecular Biology