Author

Xi Wang

BGI Group (China)ORCID 0000-0002-2805-5906Unclaimed ORCID profile · follow to get notified of new preprints

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Xi Wang13 papers · Boston Children's Hospital

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Chengcheng SongiD· 1 shared Chunli WangiD· 1 shared Daniel R. SabaniD· 1 shared Dongju CheniD· 1 shared Jordan J. Smith· 1 shared M.T. McPheeters· 1 shared Made Airanthi K. Widjaja‐AdhiiD· 1 shared Marcin GolczakiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Chengcheng SongORCID

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2 papers

Recent·Most cited

stMCP: Spatial Transcriptomics with a Model Context Protocol Server

Jordan J. Smith, Xi Wang, M.T. McPheeters, Made Airanthi K. Widjaja‐Adhi, Sejiro Littleton, Daniel R. Saban, Marcin Golczak, Michael W. Jenkins

The paper introduces stMCP, a framework for spatial transcriptomics analysis using natural language-driven protocols, enabling local execution and reducing data privacy and cost concerns.

BMC Bioinformatics · Oct 7, 2026Peer-reviewedBioinformatics

GSA: An Independent Development Algorithm for Calling Copy Number and Detecting Homologous Recombination Deficiency (HRD) from Target Capture Sequencing

Dongju Chen, Minghui Shao, Pei Meng, Chunli Wang, Qi Li, Yuhang Cai, Chengcheng Song, Xi Wang, Taiping Shi

This paper introduces GSA, an algorithm for calculating tumor purity, ploidy, and HRD scores from target capture sequencing data, showing high accuracy and sensitivity in clinical samples.

BMC Bioinformatics · Nov 23, 2021Peer-reviewedBioinformatics