Author

Bushra Samad

University of California, San FranciscoORCID 0000-0002-2893-0897Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Alexis J. CombesiD· 2 shared Jessica L. TsuiiD· 2 shared Matthew F. KrummeliD· 2 shared Tristan CourauiD· 2 shared Arja RayiD· 1 shared Austin W. EdwardsiD· 1 shared Daniel A. SkellyiD· 1 shared Daniel G. BunisiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersImmunology

Alexis J. CombesORCID

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2 papers

Recent·Most cited

Differential Assembly of Mouse and Human Tumor Microenvironments

Tristan Courau, Rebecca Garrett Jaszczak, Bushra Samad, Emily Flynn, Nayvin W. Chew, Gabriella C. Reeder, Jessica L. Tsui, Semhar Teklu, Lomax F. Pass, Austin W. Edwards, Mohammad Naser, Arja Ray, Harrison Wismer, Daniel G. Bunis, Leonard C. Lupin-Jimenez, , Matthew F. Krummel

The paper compares mouse and human tumor microenvironments, identifying conserved and species-specific features in immune composition and gene expression programs.

Nature Immunology · May 19, 2026Peer-reviewedImmunology

Space-Time Mapping Identifies Concerted Multicellular Patterns and Gene Programs in Healing Wounds and their Conservation in Cancers

Kenneth H. Hu, Nicholas F. Kuhn, Tristan Courau, Jessica L. Tsui, Bushra Samad, Patrick K. Ha, Johannes Ruediger Kratz, Alexis J. Combes, Matthew F. Krummel

The paper identifies space-time gene expression patterns in healing wounds and finds their conservation in tumors, revealing multicellular coordination and gene program activation.

Cell stem cell · Jun 1, 2023Peer-reviewedSystems Biology