Matthew W. Jacobs

Structured and Target-Specific Development of Cortico-Cortical Connectivity in the Mouse Visual Cortex

The paper investigates the development of cortico-cortical connectivity in the mouse visual cortex, finding that specific projection patterns emerge through directed axonal targeting rather than global exuberance and pruning.

Brain-wide connectivity patterns of feedforward and feedback cortico-cortical neurons in the mouse secondary visual cortex

The paper maps brain-wide long-distance input patterns of feedforward and feedback cortico-cortical neurons in the mouse secondary visual cortex, revealing similarities and differences in their connectivity.

Bell Jar: A Semi-Automated Registration and Cell Counting Tool for Mouse Neurohistology Analysis

Bell Jar is a semi-automated tool for registering brain tissue to a reference atlas and counting cells, showing reliability comparable to manual methods and better accuracy with less user input.

Brain-wide Correspondence Between Neuronal Epigenomics and Long-Distance Projections

The paper links single-cell epigenomes and projection patterns of 33,034 mouse neurons to identify transcriptomic and epigenomic properties of projection cell types.

Epigenomic Diversity of Cortical Projection Neurons in the Mouse Brain

The paper links epigenomic properties of cortical projection neurons to their anatomical and projection patterns using single-nucleus DNA methylation sequencing in mice.