Arun H. Patil

The paper identifies stage-specific miRNAs involved in human oligodendrocyte precursor cell differentiation and maturation through miRNA profiling of hESC-derived cells.

This study investigates the genetic regulation of miRNA expression in human brain tissues and identifies miRNAs associated with psychiatric and neurodegenerative disorders.

The paper introduces Brooklyn plots to detect co-expression dysregulation in scRNA-seq data, identifying altered chromatin patterns in dilated cardiomyopathy.

The paper curates a comprehensive reference of miRNA expression across 196 human primary cell types using public datasets and provides access through a UCSC Genome Browser track and R/Bioconductor package.

The paper evaluates newly sequenced T2T genomic regions for paralogous miRNA loci and novel miRNAs, finding no bona fide miRNAs and only questionable ones.

miRge3.0 improves upon previous versions by adding UMI processing, faster speed, and better integration with other tools for small RNA-seq analysis.

The paper integrates proteomic and genomic data from skeletal muscle myocytes to identify gene and protein expression differences between slow and fast-twitch fiber types.

The paper establishes the landscape of human cell-specific microRNA expression using small RNA-seq data from diverse cell types and tissues, identifying novel microRNA loci and patterns correlated with super-enhancer activity.