Lucas Levassor

StreptoCAD: An open-source software toolbox automating genome engineering workflows in streptomycetes

StreptoCAD automates genome engineering workflows in Streptomyces, streamlining design, simulation, and documentation of CRISPR-based and overexpression strategies.

EXTRA-seq: a genome-integrated extended massively parallel reporter assay to quantify enhancer-promoter communication

EXTRA-seq quantifies enhancer-promoter communication in endogenous contexts, revealing the TATA-box's role in modulating expression and improving gene expression prediction when integrated with deep learning models.

Literate programming for iterative design-build-test-learn cycles in bioengineering

The paper introduces teemi, an open-source platform for bioengineering that supports simulation, data integration, and machine learning for metabolic pathway design under FAIR principles.