Julie Russeil

Identification of methylation-sensitive human transcription factors using meSMiLE-seq

This study identifies DNA binding motifs for 98 human transcription factors using meSMiLE-seq, revealing methylation-sensitive binding preferences for some TFs.

EXTRA-seq: a genome-integrated extended massively parallel reporter assay to quantify enhancer-promoter communication

EXTRA-seq quantifies enhancer-promoter communication in endogenous contexts, revealing the TATA-box's role in modulating expression and improving gene expression prediction when integrated with deep learning models.

Transcriptomic profiling of murine GnRH neurons reveals developmental trajectories linked to human reproduction

This study profiles GnRH neurons in mice to uncover developmental gene expression patterns linked to human reproductive processes.

Context transcription factors establish cooperative environments and mediate enhancer communication

The paper identifies 'context-only' transcription factors that contribute to enhancer communication by forming cooperative environments with pioneer factors.

The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression

This study identifies the Hippo pathway's role in regulating sarcomeric gene expression to control myofibril assembly and muscle fiber growth in Drosophila.

Time- and cost-efficient high-throughput transcriptomics enabled by Bulk RNA Barcoding and sequencing

This paper introduces BRB-seq, a cost-effective bulk RNA-seq method that matches TruSeq performance and enables high-throughput transcriptomics with low-quality RNA.