Author

Anika Gupta

California Institute of TechnologyORCID 0000-0002-3265-5664Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Anika Gupta1 paper · Northwestern University

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:human· 1 Assay:metagenomics· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Adam C. BledsoeiD· 1 shared Alexander Robertson· 1 shared Anna E. RomanoiD· 1 shared Anna KuchinaiD· 1 shared Bana JabrìiD· 1 shared Christopher R. NeimethiD· 1 shared Dmitry A. SutorminiD· 1 shared Eric Vincent Marietta· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Adam C. BledsoeORCID

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2 papers

Recent·Most cited

Ultra-low biomass sequencing workflow (LBV-Seq) enables de novo metagenomic reconstruction of DNA and RNA viral genomes

Natalie J. Wu-Woods, Anna E. Romano, Christopher R. Neimeth, Anika Gupta, Xinyue Pei, Adam C. Bledsoe, Joseph A. Murray, Eric Vincent Marietta, Rok Seon Choung, Sonia S. Kupfer, Bana Jabrì, Rustem F. Ismagilov

LBV-Seq enables de novo reconstruction of DNA and RNA viral genomes from low-input samples, achieving broad genome coverage and resolving strains and gene-level variation.

bioRxiv · May 30, 2026 · PreprintGenomics

Combinatorial phenotypic landscape enables bacterial resistance to phage infection

Anika Gupta, Norma M. Morella, Dmitry A. Sutormin, Naisi Li, Karl D. Gaisser, Alexander Robertson, Yaroslav Ispolatov, Georg Seelig, Neelendu Dey, Anna Kuchina

The paper profiles single-cell transcriptomes of Bacteroides fragilis infected with a phage, revealing combinatorial phase-variable expression of defense systems that enable super-resistant cells to avoid phage infection without mutations.

bioRxiv · Jan 13, 2025 · PreprintSystems Biology