Takato Honda

OCTRON - a general purpose segmentation and tracking pipeline for behavioral experiments

OCTRON provides a segmentation and tracking pipeline for behavioral experiments, validated across species and setups.

Imaging the voltage of neurons distributed across entire brains of larval zebrafish

The paper presents a remote scanning light-sheet microscope for whole-brain voltage imaging in larval zebrafish, revealing spatial patterns of neuronal activity during visual stimuli and spontaneous bursts.

Discovery of new marine species Stentor hondawara and its whole-genome reveal their unique ecology in comparison with freshwater stentors

This paper describes the discovery of a new marine Stentor species, Stentor hondawara, and reports its whole-genome analysis revealing unique ecological adaptations compared to freshwater Stentor species.

Pixel-wise programmability enables dynamic high-SNR cameras for high-speed microscopy

This paper introduces a high-speed camera with programmable pixel sampling that improves signal-to-noise ratio, enabling detection of weak neuronal activity.

A unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior

The paper introduces ONIX, a system for long-duration neural recordings during natural behavior in mice, enabling high-throughput data acquisition with minimal behavioral impact.