Author

Frederic Saab

Centre Hospitalier Universitaire Sainte-JustineORCID 0000-0002-3351-8274Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:mouse· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Anantharamanan RajamaniiD· 1 shared Anthony Wayne PurcelliD· 1 shared Antonio Enrico ZauritoiD· 1 shared Aritra MahapatraiD· 1 shared Chen LiiD· 1 shared Chen MengiD· 1 shared David J. HameliniD· 1 shared Dieter SauriD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperCancer Biology

Anantharamanan RajamaniORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJul 7, 2026

Distinct colorectal cancer genotypes shape microbial ecosystems and reveal stage-specific microbiota dependencies

Valentina Brunner, Nicholas Bodenstein, Antonio Enrico Zaurito…·Markus Tschurtschenthaler

This study shows that different colorectal cancer genotypes create distinct microbial ecosystems and that microbiota dependence decreases as tumors progress.

DOI 10.64898/2026.07.06.736293

mousebulk RNA-seq

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BioinformaticsbioRxivPreprintNov 2, 2020

Immunopeptidomics for Dummies: Detailed Experimental Protocols and Rapid, User-Friendly Visualization of MHC I and II Ligand Datasets with MhcVizPipe

Kevin A. Kovalchik, Laura Wessling, Frederic Saab…·Isabelle Sirois

The paper provides detailed experimental protocols and an open-source tool, MhcVizPipe, for analyzing MHC I and II ligand datasets in immunopeptidomics.

7 citations

mousehuman

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