Author

Jovana Aleksic

Weill Cornell Medical College in QatarORCID 0000-0002-3366-8379Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 2 Research Focus:protein design· 2 Research Focus:protein structure prediction· 2 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Joel A. MalekiD· 3 shared Stephanie Schaefer‐RamadaniD· 3 shared Yasmin Ali MohamoudiD· 3 shared Nayra M. Al‐ThaniiD· 2 shared Ayeda Abdulsalam Ahmed· 1 shared DAVID EDWIN HILLiD· 1 shared Khadija Ahmed ElmagarmidiD· 1 shared Leena F. SyediD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 28 mutual co-author links

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3 shared papersMolecular Biology

Joel A. MalekORCID

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3 papers

Recent·Most cited

Molecular BiologyScientific ReportsPeer-reviewedJul 17, 2025

Long-read sequencing to detect full-length protein-protein interactions

Stephanie Schaefer‐Ramadan, Yue Guan, Ayeda Abdulsalam Ahmed…·Joel A. Malek

The paper introduces AVA-Seq, a method using long-read sequencing to detect full-length protein-protein interactions, achieving a 28.6% recovery rate on a gold standard dataset.

1 citation

humanlong-read sequencing

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Molecular BiologyCancer Cell InternationalPeer-reviewedDec 1, 2022

Identifying novel interactions of the colon-cancer related APC protein with Wnt-pathway nuclear transcription factors

Nayra M. Al‐Thani, Stephanie Schaefer‐Ramadan, Jovana Aleksic…·Joel A. Malek

The paper identifies novel interactions between the APC protein and Wnt-pathway nuclear transcription factors, suggesting APC may repress CTNNB1 through transcription factor binding.

4 citations

protein sequenceexperimental assay

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GenomicsProteins Structure Function and BioinformaticsPeer-reviewedDec 1, 2021

High-resolution protein fragment interactions using AVA-Seq on a human reference set

Stephanie Schaefer‐Ramadan, Jovana Aleksic, Nayra M. Al‐Thani…·Joel A. Malek

The paper tests AVA-Seq on a human PPI reference set, finding it recovers 43% of binary PPIs and identifies novel interactions.

4 citations

humanprotein structure

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