Hiroshi Masuya

Major microbiota transitions across liver disease progression are mediated by key taxa linking host environments and microbial communities

The paper uses an energy landscape analysis framework to identify key microbial taxa linked to liver disease progression and host environments.

Population-scale discovery and analysis of non-reference endogenous retrovirus insertions in wild house mice

The paper identifies and analyzes non-reference endogenous retrovirus insertions in 163 wild house mice, revealing population-specific patterns and adaptive introgression.

ELAplus: Fast and accurate analysis platform for energy landscape analysis facilitated by fine-tuning optimization algorithm.

ELAplus improves energy landscape analysis for ecological communities by enhancing computational efficiency and uncertainty assessment through optimized algorithms and bootstrap methods.

Exploring Disease Model Mouse Using Knowledge Graphs: Combining Gene Expression, Orthology, and Disease Datasets

The paper integrates multiple biological datasets to explore disease-related genes and bioresources using SPARQL queries, identifying relevant genes and anatomical parts for Alzheimer's and melanoma research.

Integrated Collection of Stem Cell Bank data, a data portal for standardized stem cell information

ICSCB provides a standardized portal to search over 16,000 stem cell lines from global resources, enabling disease-specific cell line collection.

Soft Windowing Application to Improve Analysis of High-throughput Phenotyping Data

The paper introduces a method called soft windowing to improve analysis of high-throughput phenotyping data by reducing false positives and increasing significant results.