Author

James B. Wing

Center for Advanced Modalities and DDS, Osaka UniversityORCID 0000-0002-3462-1003Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Research Focus:perturbation response prediction· 1 Assay:proteomics· 1 Assay:scATAC-seq· 1

Frequent Co-Authors

André Luiz Zorzetto-FernandesiD· 1 shared Aviv RegeviD· 1 shared Bertrand Z. YeungiD· 1 shared Caleb A. LareauiD· 1 shared David PriestiD· 1 shared Eleni P. MimitouiD· 1 shared Janyerkye TulyeuiD· 1 shared Jonas Nørskov SøndergaardiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

André Luiz Zorzetto-FernandesORCID

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2 papers

Recent·Most cited

Optimized Detection and Inference of Names in scRNA-seq data

Janyerkye Tulyeu, David Priest, James B. Wing, Jonas Nørskov Søndergaard

The paper introduces scODIN, a method that improves cell type identification in scRNA-seq by combining expert knowledge and machine learning to address gene dropout and detect rare immune cell subsets.

bioRxiv · Jan 27, 2025 · PreprintSystems Biology

Scalable, multimodal profiling of chromatin accessibility and protein levels in single cells

Eleni P. Mimitou, Caleb A. Lareau, Kelvin Y. Chen, André Luiz Zorzetto-Fernandes, Yusuke Takeshima, Wendy Luo, Tse-Shun Huang, Bertrand Z. Yeung, Pratiksha I. Thakore, James B. Wing, Kristopher L. Nazor, Shimon Sakaguchi, Leif S. Ludwig, Vijay G. Sankaran, Aviv Regev, Peter Smibert

This paper introduces ASAP-seq, a method to simultaneously profile chromatin accessibility, protein levels, and mtDNA in single cells, demonstrating its application in hematopoietic differentiation and T cell perturbations.

bioRxiv · Sep 8, 2020 · PreprintGenomics