Author

André Luiz Zorzetto-Fernandes

BioLegend (United States)ORCID 0000-0002-1740-4402Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:cell signaling & trafficking· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

Joshua D. CroteauiD· 2 shared Kelvin Y. CheniD· 2 shared Shimon SakaguchiiD· 2 shared Yusuke TakeshimaiD· 2 shared Alexander V. ChervonskyiD· 1 shared Ananda W. GoldrathiD· 1 shared Andrea Lebron Figueroa· 1 shared Anna-Maria GlobigiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersImmunology

Joshua D. CroteauORCID

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Author profile →

3 papers

Recent·Most cited

immgenT: A Comprehensive Reference of Convergent T-cell States in the Mouse

Ian Magill, Odhran Casey, Dania Mallah, Siba Smarak Panigrahi, Leon Lee Zhou, Olga Barreiro del Río, Derek J. Bangs, Gavyn Chern Wei Bee, Samantha M. Borys, Josh Choi, Can Ergen, Enxhi Ferraj, Maurizio Fiusco, Antoine Freuchet, Giovanni Galletti, , the immgenT project

immgenT creates a comprehensive T-cell molecular atlas across mouse organs and disease states, identifying 8 lineages and 107 clusters using deep generative models and integrating external datasets.

bioRxiv · Sep 2, 2026 · PreprintImmunology

Joint single-cell measurements of surface proteins, intracellular proteins and gene expression with icCITE-seq

Kelvin Y. Chen, Yusuke Takeshima, André Luiz Zorzetto-Fernandes, Kenichi Makino, Tatsuya Kibayashi, Mayu Hata, Kenji Ichiyama, Joshua D. Croteau, Kevin Taylor, Shimon Sakaguchi

This paper introduces icCITE-seq, a method that simultaneously measures surface and intracellular proteins and gene expression in single cells, validated in primary human T cells.

bioRxiv · Jan 11, 2025 · PreprintImmunology

Scalable, multimodal profiling of chromatin accessibility and protein levels in single cells

Eleni P. Mimitou, Caleb A. Lareau, Kelvin Y. Chen, André Luiz Zorzetto-Fernandes, Yusuke Takeshima, Wendy Luo, Tse-Shun Huang, Bertrand Z. Yeung, Pratiksha I. Thakore, James B. Wing, Kristopher L. Nazor, Shimon Sakaguchi, Leif S. Ludwig, Vijay G. Sankaran, Aviv Regev, Peter Smibert

This paper introduces ASAP-seq, a method to simultaneously profile chromatin accessibility, protein levels, and mtDNA in single cells, demonstrating its application in hematopoietic differentiation and T cell perturbations.

bioRxiv · Sep 8, 2020 · PreprintGenomics