Emre Güney

Inferring and Evaluating Network Medicine-Based Disease Modules with Nextflow

This paper introduces a Nextflow pipeline to evaluate disease module detection methods, showing variability in results due to method, network, and seed differences.

NGSTroubleFinder: A tool for detection and quantification of contamination and kinship across human NGS data

NGSTroubleFinder detects and quantifies contamination and kinship in human NGS data, providing detailed reports for data integrity.

Targeting comorbid diseases via network endopharmacology

This study introduces PxEA, a network-based method to identify drugs targeting common pathways across diseases, demonstrating drug repurposing opportunities for autoimmune disorders and comorbid conditions like type 2 diabetes and Alzheimer's disease.

Investigating side effect modules in the interactome and their use in drug adverse effect discovery

This study uses interactome topology to predict drug side effects and shows that drug targets are closer to proteins causing known side effects.