Author

Patrick Manfred Brunner

Icahn School of Medicine at Mount SinaiORCID 0000-0002-3488-3345Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Ali JabbariiD· 1 shared April Rose FosteriD· 1 shared Bayanne OlabiiD· 1 shared Benjamin M. RumneyiD· 1 shared Chloe AdmaneiD· 1 shared Chris M. BaconiD· 1 shared Constanze JonakiD· 1 shared Daniela Basurto-LozadaiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ali JabbariORCID

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2 papers

Recent·Most cited

Large-scale integrated single-cell analysis reveals molecular subtypes and microenvironmental remodeling in cutaneous T cell lymphoma

Ryan J. Reis, Eric Mou, Vincent Liu, Patrick Manfred Brunner, Nicholas C. Borcherding, Ali Jabbari

This study integrates a large scRNA-seq dataset of CTCL to identify molecular subtypes and microenvironmental changes with clinical relevance.

bioRxiv · Oct 25, 2026 · PreprintBioinformatics

Cutaneous T cell lymphoma atlas reveals malignant Th2 cells supported by a B cell-rich microenvironment

Ruoyan Li, Johanna Strobl, Elizabeth F. M. Poyner, Fereshteh Torabi, Pasha Mazin, Nana-Jane Chipampe, Emily Stephenson, Louis C. S. Gardner, Bayanne Olabi, Rowen Coulthard, Rachel Anne Botting, Nina Zila, Elena Prigmore, Nusayhah Hudaa Gopee, Justin Engelbert, , Muzlifah A. Haniffa

The paper identifies Th2-like malignant cells in CTCL supported by a B cell-rich microenvironment through single-cell and spatial transcriptomics analysis.

bioRxiv · Nov 6, 2023 · PreprintGenomics