Author

Julia Casado

University of HelsinkiORCID 0000-0002-3662-8794Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 2 Organism:human· 2 Assay:imaging· 2 Assay:proteomics· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Anniina FärkkiläiD· 3 shared Ada JunqueraiD· 2 shared Anni VirtaneniD· 2 shared Ella AnttilaiD· 2 shared Fernando Pérez‐VillatoroiD· 2 shared Ziqi KangiD· 2 shared Aleksandra ShabanovaiD· 1 shared Angela Szabo· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersBioinformatics

Anniina FärkkiläORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Cancer BiologyCancer DiscoveryPeer-reviewedFeb 9, 2026

✦ In-depth digest

Single-cell spatial atlas of high-grade serous ovarian cancer unveils MHC class II as a key driver of spatial tumor ecosystems and clinical outcomes

Fernando Pérez‐Villatoro, Aleksandra Shabanova, Lilian van Wagensveld…·Anniina Färkkilä

Cyclic immunofluorescence of 265 high-grade serous ovarian carcinomas and random-forest feature ranking identify cancer-cell MHC-II as an adjusted predictor of longer survival marking immune-activated tumor-stroma hotspots.

10 citationstop 1%

humanimaging

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BioinformaticsBioinformaticsPeer-reviewedFeb 19, 2025

Tribus: Semi-automated discovery of cell identities and phenotypes from multiplexed imaging and proteomicdata

Ziqi Kang, Angela Szabo, Teodora Farago…·Anniina Färkkilä

Tribus is a semi-automated tool for cell phenotyping from multiplexed imaging and proteomic data, achieving high accuracy and efficiency compared to existing methods.

6 citations

imagingproteomics

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BioinformaticsBioinformaticsPeer-reviewedOct 27, 2020

Agile workflow for interactive analysis of mass cytometry data

Julia Casado, Oskari Lehtonen, Ville Rantanen…·Sampsa Hautaniemi

The paper introduces an interactive workflow called Cyto for analyzing mass cytometry data, demonstrating its ability to capture immune cell sub-populations and tumor compositions in blood and ovarian cancer samples.

8 citations

humanproteomics

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