Author

Frank Allgöwer

University of StuttgartORCID 0000-0002-3702-3658Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:scRNA-seq· 2 Research Focus:trajectory inference· 2 Organism:human· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Karsten KuritziD· 2 shared Alain R. BonnyiD· 1 shared Daniela Simone Maichl· 1 shared Daniela StöhriD· 1 shared João Pedro FonsecaiD· 1 shared Markus RehmiD· 1 shared Nadine PollakiD· 1 shared Nicole Erika RaddeiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersSystems Biology

Karsten KuritzORCID

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3 papers

Recent·Most cited

A provably convergent control closure scheme for the Method of Moments of the Chemical Master Equation

Vincent Wagner, Robin Strässer, Frank Allgöwer, Nicole Erika Radde

This paper introduces a novel moment closure scheme using Model Predictive Control to accurately predict the time evolution of moments in the Chemical Master Equation, outperforming existing methods.

Journal of Chemical Theory and Computation · Dec 5, 2023Peer-reviewedSystems Biology

PDE-constrained optimization for estimating population dynamics over cell cycle from static single cell measurements

Karsten Kuritz, Alain R. Bonny, João Pedro Fonseca, Frank Allgöwer

The paper introduces a PDE-constrained optimization framework to estimate cell cycle dynamics from static single-cell data, showing it can identify M-phase arrest in treated K562 cells.

bioRxiv · Mar 30, 2020 · PreprintSystems Biology

Reconstructing temporal and spatial dynamics in single-cell experiments

Karsten Kuritz, Daniela Stöhr, Daniela Simone Maichl, Nadine Pollak, Markus Rehm, Frank Allgöwer

This paper introduces MAPiT, a method to convert pseudotime scales into real-time and spatial dynamics from single-cell data, applied to cell cycle kinetics and spatial arrangement in spheroids.

bioRxiv · Jul 9, 2019 · PreprintSystems Biology