Author

Karsten Kuritz

University of StuttgartORCID 0000-0002-5452-8957Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:trajectory inference· 2 Organism:human· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Frank AllgöweriD· 2 shared Alain R. BonnyiD· 1 shared Daniela Simone Maichl· 1 shared Daniela StöhriD· 1 shared João Pedro FonsecaiD· 1 shared Markus RehmiD· 1 shared Nadine PollakiD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

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7 top collaborators · 13 mutual co-author links

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2 shared papersSystems Biology

Frank AllgöwerORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintMar 30, 2020

PDE-constrained optimization for estimating population dynamics over cell cycle from static single cell measurements

Karsten Kuritz, Alain R. Bonny, João Pedro Fonseca, Frank Allgöwer

The paper introduces a PDE-constrained optimization framework to estimate cell cycle dynamics from static single-cell data, showing it can identify M-phase arrest in treated K562 cells.

DOI 10.1101/2020.03.30.015909

humanscRNA-seq

Systems BiologybioRxivPreprintJul 9, 2019

Reconstructing temporal and spatial dynamics in single-cell experiments

Karsten Kuritz, Daniela Stöhr, Daniela Simone Maichl…·Frank Allgöwer

This paper introduces MAPiT, a method to convert pseudotime scales into real-time and spatial dynamics from single-cell data, applied to cell cycle kinetics and spatial arrangement in spheroids.

DOI 10.1101/697151

scRNA-seqstatistical model