Katharina Waury

Comparison of sequence- and structure-based antibody clustering approaches on simulated repertoire sequencing data

This study compares sequence- and structure-based antibody clustering methods on simulated repertoire data, finding structure-based methods identify more multiple-occupancy clusters but have length constraints.

Data-driven evaluation of suitable immunogens for improved antibody selection

This study evaluates immunogen properties to improve antibody selection by analyzing structural and functional features and developing a tool for applying these insights.

Proteome encoded determinants of protein sorting into extracellular vesicles

This study predicts protein association with extracellular vesicles using sequence-based models and identifies palmitoylation as a key determinant.

DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

DECONbench benchmarks deconvolution methods for quantifying tumor cell-type heterogeneity by providing datasets, tools, and performance evaluation.

SeRenDIP-CE: Sequence-based Interface Prediction for Conformational Epitopes

The paper introduces SeRenDIP-CE, a sequence-based method for predicting conformational epitopes, achieving better performance than existing predictors on an antibody-antigen structure.