Author

Aaron E. Chiou

Stanford MedicineORCID 0000-0002-3762-9385Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1

Frequent Co-Authors

Aaron T. MayeriD· 1 shared Alexander Dimitrios ColevasiD· 1 shared Alexandro E. TrevinoiD· 1 shared Alice YuiD· 1 shared Ann Marie EgloffiD· 1 shared Christine Y. YehiD· 1 shared Eric WuiD· 1 shared Gregory W. CharvilleiD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Aaron T. MayerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

7-UP: generating in silico CODEX from a small set of immunofluorescence markers

Eric Wu, Alexandro E. Trevino, Zhenqin Wu, Kyle Swanson, Honesty Kim, H. Blaize D’Angio, Ryan Preska, Aaron E. Chiou, Gregory W. Charville, Piero D. Dalerba, Umamaheswar Duvvuri, Alexander Dimitrios Colevas, Jelena Levi, Nikita Bedi, Serena Chang, , James Zou

7-UP generates in silico 40-plex CODEX data from a 7-plex mIF panel using cellular morphology, enabling cell type classification and survival prediction across diverse samples.

PNAS Nexus · May 19, 2023Peer-reviewedBioinformatics

Reconstructing co-dependent cellular crosstalk in lung adenocarcinoma using REMI

Alice Yu, Yuanyuan Li, Irene Li, Michael G. Ozawa, Christine Y. Yeh, Aaron E. Chiou, Winston Trope, Jonathan Taylor, Joseph B. Shrager, Sylvia K. Plevritis

The paper introduces REMI, a graph-based method to reconstruct cell-cell interactions in lung adenocarcinoma by accounting for ligand-receptor dependencies, and validates its findings experimentally.

Science Advances · Mar 18, 2022Peer-reviewedBioinformatics