Author

Yoav Freund

University of California San DiegoORCID 0000-0002-3850-6184Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Neuroscience· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:imaging· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Alexander Groisman· 1 shared Andrei H GheorgheiD· 1 shared Barsha PokhareliD· 1 shared Beth FriedmaniD· 1 shared David Alan ThompsoniD· 1 shared David KleinfeldiD· 1 shared Denitsa MilanovaiD· 1 shared Fan WangiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperNeuroscience

Alexander Groisman

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Systems BiologybioRxivPreprintOct 23, 2026

Inference and validation of causal genetic interactions in aging human fibroblasts

Madison S. Krieger, Denitsa Milanova, David Alan Thompson…·George M. Church

This paper uses convergent cross mapping to infer causal genetic interactions from cross-sectional transcriptomic data of aging human fibroblasts and validates these interactions experimentally.

DOI 10.64898/2026.10.21.760791

humanbulk RNA-seq

𝕏 PostBluesky

NeuroscienceAI OpenPeer-reviewedJan 1, 2024

CellBoost: A pipeline for machine assisted annotation in neuroanatomy

Kui Qian, Beth Friedman, Jun Takatoh…·Yoav Freund

CellBoost reduces annotation labor in neuroanatomy by combining human judgment and machine learning, achieving accuracy comparable to human agreement while decreasing time by up to ten-fold.

2 citations

mouseimaging

𝕏 PostBluesky