Author

Bavo Vanneste

Ghent UniversityORCID 0000-0002-4152-5634Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Organism:mouse· 1

Frequent Co-Authors

Charlotte L. ScottiD· 2 shared Anna BujkoiD· 1 shared Arne DefauwiD· 1 shared Benjamin RombautiD· 1 shared Christian ZwickeriD· 1 shared Elisa Semle· 1 shared Emma Rachel AnderssoniD· 1 shared Evelien Van HammeiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Charlotte L. ScottORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

SPArrOW: a flexible, interactive and scalable pipeline for spatial transcriptomics analysis

Lotte Pollaris, Bavo Vanneste, Benjamin Rombaut, Arne Defauw, Frank Vernaillen, Julien Mortier, Wout Vanhenden, Liesbet Martens, Tinne Thoné, Jean‐François Hastir, Anna Bujko, Wouter Saelens, Jean‐Christophe Marine, Hilde Nelissen, Evelien Van Hamme, , Yvan Saeys

SPArrOW is a pipeline for spatial transcriptomics analysis that improves data quality, provides visual quality checks, and enables interactive exploration and optimization of processing parameters.

bioRxiv · Jul 4, 2024 · PreprintBioinformatics

Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution

Franziska Hildebrandt, Miren Urrutia Iturritza, Christian Zwicker, Bavo Vanneste, Noémi Van Hul, Elisa Semle, Tales Vicari Pascini, Sami Saarenpää, Mengxiao He, Emma Rachel Andersson, Charlotte L. Scott, Joel Vega-Rodríguez, Joakim Lundeberg, Johan Ankarklev

This study uses spatial transcriptomics and snRNA-seq to analyze host-pathogen interactions in P. berghei-infected mouse liver tissues, revealing changes in lipid metabolism and inflammatory responses.

bioRxiv · Dec 22, 2023 · PreprintMolecular Biology