Author

Refugio Robles‐Sikisaka

Scripps Research InstituteORCID 0000-0002-4203-3252Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Organism:virus· 1

Frequent Co-Authors

Glenn OliveiraiD· 2 shared Karthik GangavarapuiD· 2 shared Kristian G. AnderseniD· 2 shared Nathan D. GrubaughiD· 2 shared Aaron E. LiniD· 1 shared Adrianne D. GladdeniD· 1 shared Allison BlackiD· 1 shared Amanda L. TaniD· 1 shared

Activity by Year

2017-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersGenomics

Glenn OliveiraORCID

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2 papers

Recent·Most cited

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

Joshua Quick, Nathan D. Grubaugh, Steven T. Pullan, Ingra Morales Claro, Andrew D. Smith, Karthik Gangavarapu, Glenn Oliveira, Refugio Robles‐Sikisaka, Thomas F. Rogers, Nathan Beutler, Dennis R. Burton, Lia Laura Lewis‐Ximenez, Jaqueline Góes de Jesus, Marta Giovanetti, Sarah Catherine Hill, , Nicholas James Loman

This paper describes a method to sequence Zika and other virus genomes directly from clinical samples using multiplex PCR and portable sequencing technologies, achieving complete genomes in 1-2 days.

Nature Protocols · May 24, 2017Peer-reviewedGenomics

Genome sequencing reveals Zika virus diversity and spread in the Americas

Hayden C. Metsky, Christian B. Matranga, Shirlee Wohl, Stephen F. Schaffner, Catherine A. Freije, Sarah M. Winnicki, Kendra L. West, James Qu, Mary Lynn Baniecki, Adrianne D. Gladden, Aaron E. Lin, Christopher H. Tomkins-Tinch, Simon H. Ye, Daniel J. Park, Cynthia Y. Luo, , Pardis Christine Sabeti

This study sequenced 110 Zika virus genomes from 10 countries, revealing rapid expansion in Brazil, multiple introductions into other regions, and undetected circulation before confirmed cases.

Nature · May 23, 2017Peer-reviewedGenomics