Author

Konstantin Thierbach

Max Planck Institute for Human Cognitive and Brain SciencesORCID 0000-0002-4418-9963Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Assay:imaging· 2 Research Focus:trajectory inference· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:spatial domain detection· 1 Organism:zebrafish· 1

Frequent Co-Authors

Nico ScherfiD· 3 shared Ingo RoederiD· 2 shared Anna ReadeiD· 1 shared Benjamin SchmidiD· 1 shared Carsten JägeriD· 1 shared Evgeniya P. KirilinaiD· 1 shared Filippos Gavriilidis· 1 shared Gopi ShahiD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersBioinformatics

Nico ScherfORCID

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3 papers

Recent·Most cited

TraCurate: efficiently curating cell tracks

Sebastian Wagner, Konstantin Thierbach, Thomas Zerjatke, Ingmar Glauche, Ingo Roeder, Nico Scherf

TraCurate curates and annotates cell tracking data from time-lapse microscopy, improving accuracy with minimal user input.

SoftwareX · Jan 1, 2021Peer-reviewedBioinformatics

Combining Deep Learning and Active Contours Opens The Way to Robust, Automated Analysis of Brain Cytoarchitectonics

Konstantin Thierbach, Pierre‐Louis Bazin, Walter de Back, Filippos Gavriilidis, Evgeniya P. Kirilina, Carsten Jäger, Markus Morawski, Stefan Geyer, Nikolaus Weiskopf, Nico Scherf

This paper develops a method combining deep learning and active contours for automated segmentation of neural cell bodies from light-sheet microscopy data.

Lecture notes in computer science · Jan 1, 2018Peer-reviewedBioinformatics

Pan-embryo cell dynamics of germlayer formation in zebrafish

Gopi Shah, Konstantin Thierbach, Benjamin Schmid, Anna Reade, Ingo Roeder, Nico Scherf, Jan Huisken

The paper analyzes cell dynamics across all three germlayers in zebrafish gastrulation, showing that cell movement is position-dependent rather than germlayer-specific.

bioRxiv · Aug 9, 2017 · PreprintDevelopmental Biology