Rosalind J. Xu

This paper investigates how voltage dynamics and ion content in nanoscale compartments differ from larger structures by adapting conductance-based models and simulating small vesicles and macrophage endosomes.

This paper creates a gut transcriptomics atlas using MERFISH to show how microbiota influences cell types, spatial organization, and molecular responses in the murine gut.

This study optimizes MERFISH protocols to improve RNA imaging performance in cell culture and tissue samples.

The paper introduces a method to identify spatially variable genes by projecting spatial transcriptomics data onto morphologically relevant curves, improving detection accuracy and biological interpretation.

Polaris provides a deep learning-based pipeline for analyzing spatial transcriptomics data, improving spot detection and gene expression quantification.